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Publications for Advancements to State-Space Models (SSMs) for Fisheries Science

Whoriskey, K., M. Auger-Méthé, C. M. Albertsen, F. G. Whoriskey, T. Binder, C. Krueger, and J. Mills Flemming (In press) A Switching Hidden Markov Movement Model for rapidly identifying behavioral states from animal tracks. Ecology and Evolution.
O. Defeo, C. A. M. Barboza, W. H. Aeberhard, F. R. Barboza, T. Cabrini, R. Cardoso, L. Ortega, V. Skinner, and B. Worm (In press) Macrofauna Diversity Patterns in South American Sandy Beaches: an Interocean Comparison. Global Ecology and Biogeography. 3. Steeves, H. N., Mcmeans, B.
Steeves, H. N., Mcmeans, B., Field, C., Stewart, C., Arts, M. T., Fisk, A. T., & Macneil, M. A. (2016). Non-parametric analysis of the spatio-temporal variability in the fatty-acid profiles among Greenland sharks. Journal of the Marine Biological Association of the United Kingdom: 1-7.
Albertsen, C. M., K. Whoriskey, D. Yurkowski, A. Nielsen, and J. Mills Flemming (2015). Fast fitting of robust state-space models to animal movement data via Template Model Builder.
Ximing Xu, E. Cantoni, E., J. Mills Flemming and C. Field (2015) Robust state space models for estimating fish stock maturities. Canadian Journal of Statistics.
N.G. Cadigan (2015) A state-space stock assessment model for northern cod, including under-reported catches and variable natural mortality rates.
Y. Yin, W. H. Aeberhard, S. J. Smith, J. Mills Flemming (2017). State-space population dynamics models: a comparison of Bayesian and likelihood approaches using the Nova Scotia sea scallop fishery. For submission to Fisheries Research.
W. H. Aeberhard and J. Mills Flemming (2017). A Review of State-Space Methodologies for Fisheries Science. In preparation for Volume 5 of the Annual Review of Statistics and Its Application.
W. H. Aeberhard, E. Cantoni, C. Field, and J. Mills Flemming (2017) Robust Bounded-Influence Estimation of Fixed Parameters for General State-Space Models. For submission to the Journal of the American Statistical Association.
W. H. Aeberhard and M. Hannay (2016). Semiparametric Generalised Linear Models Based on Exponentially Tilted Mixtures. Submitted.
J. Mills Flemming (2015). External Reviewer Report following the Northern Cod Framework Meeting held at the Northwest Atlantic Fisheries Centre, St. John’s, NL.
K. Whoriskey (2014). Fitting State Space Models in Template Model Builder. Report for Graduate Reading Course in State Space Modelling.

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